PubChem-MCP-Server

updated this year

A comprehensive Model Context Protocol (MCP) server for accessing the PubChem chemical database. This server provides access to over 110 million chemical compounds with extensive molecular properties, bioassay data, and chemical informatics tools.

Code-only MCP server: no hosted endpoint, so you install and run it yourself. It is not probed, graded or counted in our reachability statistics.

Get it

Repository: github.com/Augmented-Nature/PubChem-MCP-Server
License: NOASSERTION
Last update: 2025-12-21
GitHub stars: ★ 48

cheminformatics mcp-server pubchem

Listed in

github · source

Run this server as a hosted endpoint? Submit the endpoint and it moves to the remote directory, where it is probed and graded.