encode-toolkit

active

MCP server and Claude Code plugin for the ENCODE Project: search, download and analyze ChIP-seq, ATAC-seq, RNA-seq, WGBS, Hi-C and CUT&RUN data with 20 tools, 47 skills and 7 Nextflow pipelines

Code-only MCP server: no hosted endpoint, so you install and run it yourself. It is not probed, graded or counted in our reachability statistics.

Get it

Repository: github.com/ammawla/encode-toolkit
License: AGPL-3.0
Last update: 2026-09-27
GitHub stars: ★ 20
Homepage: pypi.org/project/encode-toolkit/

ai ai-agents ai-bio bioinformatics bioinformatics-tool claude claude-code claude-code-mcp claude-code-plugin claude-code-skills claude-mcp claude-plugin

Listed in

github · source

Run this server as a hosted endpoint? Submit the endpoint and it moves to the remote directory, where it is probed and graded.